Hello Martin,
thank you for the reply. We have a juypter installation of our users of the hpc resources of the jsc supercomputing resources. Because of the different use-cases it has to consider, the list of extensions and packages is quite long. In general all extensions of jupyterlab work nicely together, but jupyter-leaflet does not since the last update our jupyter software stack.
This is part of our easybuild-script for the jupyter module. You can see, that I have to install jupyter-leaflet a second time to make it work:
### JupyterLab Extensions
'source %(builddir)s/env.sh && jupyter labextension install @jupyter-widgets/jupyterlab-manager@1.1.0 --no-build', # Jupyter widgets extension
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-datawidgets@6.2.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install dask-labextension@1.1.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/server-proxy@2.0.0 --no-build', # MUST be > 1.1.0 # provide launcher icons for registered server processes
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-lmod@0.2.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install itkwidgets@0.26.0 --no-build', # installation lets jupyterlab-plotly and/or dask-labextension FAIL with "Error: Can't resolve 'es6-promise/auto'"
'source %(builddir)s/env.sh && jupyter labextension install plotlywidget@1.5.2 --no-build', # FigureWidget support of plotly
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-plotly@1.5.2 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/latex@1.0.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @pyviz/jupyterlab_pyviz@0.8.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-matplotlib@0.5.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-leaflet@0.12.3 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-webrtc@0.5.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install ipyvolume@0.5.2 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-threejs@2.1.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-vuetify@1.1.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install bqplot@0.5.3 --no-build', # compatible with python package bqplot 0.12.3
'source %(builddir)s/env.sh && jupyter labextension install pvlink@0.2.3 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @bokeh/jupyter_bokeh@1.1.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-gitlab@0.3.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab_iframe@0.2.1 --no-build', # js-version 0.1.9 fits to python-extension 0.1.11
# jupyterlab extensions known to be fancy
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/git@0.8.2 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install nbdime-jupyterlab@1.0.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @ryantam626/jupyterlab_code_formatter@0.6.1 --no-build', # pip install jupyterlab_code_formatter, black==19.3b0 && yapf==0.28.0 && autopep8==1.4.4
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/toc@1.0.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyter-widgets/jupyterlab-sidecar@0.4.0 --no-build', # pip install sidecar
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-drawio@0.6.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/celltags@0.2.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @krassowski/jupyterlab_go_to_definition@0.7.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyter-voila/jupyterlab-preview@0.1.3 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-dash@0.1.0-alpha.3 --no-build',
# logout button
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-topbar-extension@0.4.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-system-monitor@0.4.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-theme-toggle@0.4.2 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-logout@0.4.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-control@1.0.1 --no-build',
## build JupyterLab app directory for all previous installed extensions in one go
'source %(builddir)s/env.sh && jupyter lab build --dev-build=False',
# needs to be build a second time - https://github.com/jupyter-widgets/ipyleaflet/issues/504
'source %(builddir)s/env.sh && jupyter labextension install jupyter-leaflet@0.12.3 ',
Using a fresh dir with a clean pipenv environment.
(ipyleaflet_pip_install) xxxxxxx@zzzzz:~/code/ipyleaflet_test/ipyleaflet_pip_install$ pip install ipyleaflet
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Downloading https://files.pythonhosted.org/packages/ab/05/27e1466475e816d3001efb6e0a85a819be17411420494a1e602c36f8299d/bleach-3.1.0-py2.py3-none-any.whl (157kB)
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Collecting mistune<2,>=0.8.1 (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets<8,>=7.5.0->ipyleaflet)
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Building wheels for collected packages: tornado, backcall, prometheus-client, pyrsistent, pandocfilters
Building wheel for tornado (setup.py) ... done
Created wheel for tornado: filename=tornado-6.0.3-cp36-cp36m-linux_x86_64.whl size=423199 sha256=af04dd2ab59ee9acb15e126e32e46ad39248840cf43b39f5c65c1fe37ec94d43
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Created wheel for prometheus-client: filename=prometheus_client-0.7.1-cp36-none-any.whl size=41402 sha256=4b58b558731b862c6c4a6c9e7b7c7d7cf867e25b91e1166e3cbe1949da49f0b9
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Created wheel for pyrsistent: filename=pyrsistent-0.15.4-cp36-cp36m-linux_x86_64.whl size=97545 sha256=85706f7259314f60a3170bf5e2846be45049eb4343cf45a211f8a991afe761ac
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Successfully built tornado backcall prometheus-client pyrsistent pandocfilters
Installing collected packages: numpy, pytz, six, python-dateutil, pandas, xarray, decorator, ipython-genutils, traitlets, parso, jedi, pickleshare, pygments, wcwidth, prompt-toolkit, backcall, ptyprocess, pexpect, ipython, jupyter-core, pyzmq, tornado, jupyter-client, ipykernel, prometheus-client, MarkupSafe, jinja2, pyrsistent, attrs, jsonschema, nbformat, terminado, pandocfilters, testpath, entrypoints, defusedxml, webencodings, bleach, mistune, nbconvert, Send2Trash, notebook, widgetsnbextension, ipywidgets, branca, traittypes, ipyleaflet
Successfully installed MarkupSafe-1.1.1 Send2Trash-1.5.0 attrs-19.1.0 backcall-0.1.0 bleach-3.1.0 branca-0.3.1 decorator-4.4.0 defusedxml-0.6.0 entrypoints-0.3 ipykernel-5.1.2 ipyleaflet-0.11.1 ipython-7.8.0 ipython-genutils-0.2.0 ipywidgets-7.5.1 jedi-0.15.1 jinja2-2.10.1 jsonschema-3.0.2 jupyter-client-5.3.1 jupyter-core-4.5.0 mistune-0.8.4 nbconvert-5.6.0 nbformat-4.4.0 notebook-6.0.1 numpy-1.17.1 pandas-0.25.1 pandocfilters-1.4.2 parso-0.5.1 pexpect-4.7.0 pickleshare-0.7.5 prometheus-client-0.7.1 prompt-toolkit-2.0.9 ptyprocess-0.6.0 pygments-2.4.2 pyrsistent-0.15.4 python-dateutil-2.8.0 pytz-2019.2 pyzmq-18.1.0 six-1.12.0 terminado-0.8.2 testpath-0.4.2 tornado-6.0.3 traitlets-4.3.2 traittypes-0.2.1 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.5.1 xarray-0.12.3
(ipyleaflet_pip_install) xxxxxxx@zzzzz:~/code/ipyleaflet_test/ipyleaflet_pip_install$ pip install jupyterlab
Collecting jupyterlab
Downloading https://files.pythonhosted.org/packages/cf/94/40e0196769a58c611bc825d9038a6efdec2ae09811e9de0ad740019fb0a3/jupyterlab-1.1.1-py2.py3-none-any.whl (15.3MB)
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Requirement already satisfied: notebook>=4.3.1 in /home/xxxxxxx/.local/share/virtualenvs/ipyleaflet_pip_install-DdigXhqv/lib/python3.6/site-packages (from jupyterlab) (6.0.1)
Requirement already satisfied: jinja2>=2.10 in /home/xxxxxxx/.local/share/virtualenvs/ipyleaflet_pip_install-DdigXhqv/lib/python3.6/site-packages (from jupyterlab) (2.10.1)
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Collecting jupyterlab-server~=1.0.0 (from jupyterlab)
Downloading https://files.pythonhosted.org/packages/78/98/5b87b9d38176bd98f23b58a8fb730e5124618d68571a011abbd38ad4a842/jupyterlab_server-1.0.6-py3-none-any.whl
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Requirement already satisfied: prometheus-client in /home/xxxxxxx/.local/share/virtualenvs/ipyleaflet_pip_install-DdigXhqv/lib/python3.6/site-packages (from notebook>=4.3.1->jupyterlab) (0.7.1)
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Requirement already satisfied: Send2Trash in /home/xxxxxxx/.local/share/virtualenvs/ipyleaflet_pip_install-DdigXhqv/lib/python3.6/site-packages (from notebook>=4.3.1->jupyterlab) (1.5.0)
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Collecting json5 (from jupyterlab-server~=1.0.0->jupyterlab)
Downloading https://files.pythonhosted.org/packages/30/44/062543d4a6718f99d82e5ecf9140dbdee8a03122f2c34fbd0b0609891707/json5-0.8.5-py2.py3-none-any.whl
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Requirement already satisfied: six in /home/xxxxxxx/.local/share/virtualenvs/ipyleaflet_pip_install-DdigXhqv/lib/python3.6/site-packages (from traitlets>=4.2.1->notebook>=4.3.1->jupyterlab) (1.12.0)
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Requirement already satisfied: bleach in /home/xxxxxxx/.local/share/virtualenvs/ipyleaflet_pip_install-DdigXhqv/lib/python3.6/site-packages (from nbconvert->notebook>=4.3.1->jupyterlab) (3.1.0)
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Installing collected packages: json5, jupyterlab-server, jupyterlab
Successfully installed json5-0.8.5 jupyterlab-1.1.1 jupyterlab-server-1.0.6
(ipyleaflet_pip_install) xxxxxxx@zzzzz:~/code/ipyleaflet_test/ipyleaflet_pip_install$ jupyter labextension install jupyter-leaflet
Building jupyterlab assets (build:prod:minimize)
(ipyleaflet_pip_install) xxxxxxx@zzzzz:~/code/ipyleaflet_test/ipyleaflet_pip_install$ jupyter labextension install @jupyter-widgets/jupyterlab-manager
Building jupyterlab assets (build:prod:minimize)
Results in a setup that also displays maps.
I’ll now go back to my original pipenv environment and see what is wrong with that one.
Thanks.
How do I report an issue or make a feature request¶
Please go to https://github.com/giswqs/leafmap/issues.
What’s the difference between folium and ipyleaflet¶
A key difference between ipyleaflet and folium is that ipyleaflet is built upon ipywidgets and allows bidirectional communication between the front-end and the backend enabling the use of the map to capture user input, while folium is meant for displaying static data only (source). Note that Google Colab currently does not support ipyleaflet (source). Therefore, if you are using leafmap
with Google Colab, import leafmap will automatically use the folium plotting backend. If you are using leafmap with Jupyter installed locally, import leafmap will automatically use the `ipyleaflet’, which provides more functionalities for capturing user input (e.g., mouse-clicking and moving).
How to use a specific plotting backend¶
leafmap has three plotting backends: folium, ipyleaflet, and here-map-widget-for-jupyter. If you are using leafmap with Jupyter installed locally, import leafmap will use the ipyleaflet plotting backend by default. If you are using leafmap with Google Colab, import leafmap will use the folium plotting backend by default. Note that Google Colab does not yet support ipyleaflet (source). Therefore, you won’t be able to access the leafmap toolbar in Colab. Note that the backends do not offer equal functionality. Some interactive functionality in ipyleaflet might not be available in folium or heremap. To use a specific plotting backend, use one of the following:
import leafmap.leafmap as leafmapimport leafmap.foliumap as leafmapimport leafmap.heremap as leafmap
Why the interactive map does not show up¶
If the interactive map does not show up on Jupyter Notebook and JupyterLab, it is probably because the ipyleaflet extension is not installed properly.
For example, you might receive an error message saying Error displaying widget: model not found. This a well-known issue related to ipyleaflet. See some relevant issues below.
- How to display map object using ipyleaflet in jupyter notebook or jupyter Lab
- ipyleaflet does not work in jupyter lab — «Error displaying widget: model not found»
- Error displaying widget: model not found
Try some of the options below to resolve the issue. If the issue persists after trying these steps, you can open an issue on the ipyleaflet repository.
For Jupyter notebook, try running the following two commands within your leafmap conda environment:
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For JupyterLab, try running the following command within your leafmap conda environment:
|
Alternatively, you can run leafmap directly using binder:
- https://gishub.org/leafmap-binder
- https://gishub.org/leafmap-binder
How to use leafmap in countries where Google Services are blocked¶
If you are trying to use leafmap in countries where Google Services are blocked (e.g., China), you will need a VPN. Use leafmap.set_proxy(port=your-port-number) to connect to Google servers. Otherwise, you might encounter a connection timeout issue.
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Last update:
2021-12-25
Created:
2021-03-10
thank you for the reply. We have a juypter installation of our users of the hpc resources of the jsc supercomputing resources. Because of the different use-cases it has to consider, the list of extensions and packages is quite long. In general all extensions of jupyterlab work nicely together, but jupyter-leaflet does not since the last update our jupyter software stack.
This is part of our easybuild-script for the jupyter module. You can see, that I have to install jupyter-leaflet a second time to make it work:
### JupyterLab Extensions
'source %(builddir)s/env.sh && jupyter labextension install @jupyter-widgets/jupyterlab-manager@1.1.0 --no-build', # Jupyter widgets extension
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-datawidgets@6.2.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install dask-labextension@1.1.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/server-proxy@2.0.0 --no-build', # MUST be > 1.1.0 # provide launcher icons for registered server processes
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-lmod@0.2.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install itkwidgets@0.26.0 --no-build', # installation lets jupyterlab-plotly and/or dask-labextension FAIL with "Error: Can't resolve 'es6-promise/auto'"
'source %(builddir)s/env.sh && jupyter labextension install plotlywidget@1.5.2 --no-build', # FigureWidget support of plotly
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-plotly@1.5.2 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/latex@1.0.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @pyviz/jupyterlab_pyviz@0.8.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-matplotlib@0.5.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-leaflet@0.12.3 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-webrtc@0.5.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install ipyvolume@0.5.2 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-threejs@2.1.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyter-vuetify@1.1.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install bqplot@0.5.3 --no-build', # compatible with python package bqplot 0.12.3
'source %(builddir)s/env.sh && jupyter labextension install pvlink@0.2.3 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @bokeh/jupyter_bokeh@1.1.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-gitlab@0.3.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab_iframe@0.2.1 --no-build', # js-version 0.1.9 fits to python-extension 0.1.11
# jupyterlab extensions known to be fancy
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/git@0.8.2 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install nbdime-jupyterlab@1.0.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @ryantam626/jupyterlab_code_formatter@0.6.1 --no-build', # pip install jupyterlab_code_formatter, black==19.3b0 && yapf==0.28.0 && autopep8==1.4.4
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/toc@1.0.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyter-widgets/jupyterlab-sidecar@0.4.0 --no-build', # pip install sidecar
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-drawio@0.6.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyterlab/celltags@0.2.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @krassowski/jupyterlab_go_to_definition@0.7.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install @jupyter-voila/jupyterlab-preview@0.1.3 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-dash@0.1.0-alpha.3 --no-build',
# logout button
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-topbar-extension@0.4.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-system-monitor@0.4.1 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-theme-toggle@0.4.2 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-logout@0.4.0 --no-build',
'source %(builddir)s/env.sh && jupyter labextension install jupyterlab-control@1.0.1 --no-build',
## build JupyterLab app directory for all previous installed extensions in one go
'source %(builddir)s/env.sh && jupyter lab build --dev-build=False',
# needs to be build a second time - https://github.com/jupyter-widgets/ipyleaflet/issues/504
'source %(builddir)s/env.sh && jupyter labextension install jupyter-leaflet@0.12.3 ',