Python exception memory error

Впервые я столкнулся с Memory Error, когда работал с огромным массивом ключевых слов. Там было около 40 млн. строк, воодушевленный своим гениальным скриптом я нажал Shift + F10 и спустя 20 секунд получил Memory Error.

Memory Error — исключение вызываемое в случае переполнения выделенной ОС памяти, при условии, что ситуация может быть исправлена путем удаления объектов. Оставим ссылку на доку, кому интересно подробнее разобраться с этим исключением и с формулировкой. Ссылка на документацию по Memory Error.

Если вам интересно как вызывать это исключение, то попробуйте исполнить приведенный ниже код.

print('a' * 1000000000000)

Почему возникает MemoryError?

В целом существует всего лишь несколько основных причин, среди которых:

• 32-битная версия Python, так как для 32-битных приложений Windows выделяет лишь 4 гб, то серьезные операции приводят к MemoryError
• Неоптимизированный код
• Чрезмерно большие датасеты и иные инпут файлы
• Ошибки в установке пакетов

Как исправить MemoryError?

Ошибка связана с 32-битной версией

Тут все просто, следуйте данному гайдлайну и уже через 10 минут вы запустите свой код.

Как посмотреть версию Python?

Идем в cmd (Кнопка Windows + R -> cmd) и пишем python. В итоге получим что-то похожее на

Python 3.8.8 (tags/v3.8.8:024d805, Feb 19 2021, 13:18:16) [MSC v.1928 64 bit (AMD64)]

Нас интересует эта часть [MSC v.1928 64 bit (AMD64)], так как вы ловите MemoryError, то скорее всего у вас будет 32 bit.

Как установить 64-битную версию Python?

Идем на официальный сайт Python и качаем установщик 64-битной версии. Ссылка на сайт с официальными релизами. В скобках нужной нам версии видим 64-bit. Удалять или не удалять 32-битную версию — это ваш выбор, я обычно удаляю, чтобы не путаться в IDE. Все что останется сделать, просто поменять интерпретатор.

Идем в PyCharm в File -> Settings -> Project -> Python Interpreter -> Шестеренка -> Add -> New environment -> Base Interpreter и выбираем python.exe из только что установленной директории. У меня это

C:/Users/Core/AppData/LocalPrograms/Python/Python38

Все, запускаем скрипт и видим, что все выполняется как следует.

Оптимизация кода

Пару раз я встречался с ситуацией когда мои костыли приводили к MemoryError. К этому приводили избыточные условия, циклы и буферные переменные, которые не удаляются после потери необходимости в них. Если вы понимаете, что проблема может быть в этом, вероятно стоит закостылить пару del, мануально удаляя ссылки на объекты. Но помните о том, что проблема в архитектуре вашего проекта, и по настоящему решить эту проблему можно лишь правильно проработав структуру проекта.

Явно освобождаем память с помощью сборщика мусора

В целом в 90% случаев проблема решается переустановкой питона, однако, я  просто обязан рассказать вам про библиотеку gc. В целом почитать про Garbage Collector стоит отдельно на авторитетных ресурсах в статьях профессиональных программистов. Вы просто обязаны знать, что происходит под капотом управления памятью. GC — это не только про Python, управление памятью в Java и других языках базируется на технологии сборки мусора. Ну а вот так мы можем мануально освободить память в Python:

A programming language will raise a memory error when a computer system runs out of RAM Random Access Memory or memory to execute code.

If it fails to execute a Python script, the Python interpreter will present a MemoryError exception for the Python programming. This article will talk about the MemoryError in Python.

the MemoryError in Python

A memory error is raised when a Python script fills all the available memory in a computer system. One of the most obvious ways to fix this issue is to increase the machine's RAM.

But buying a new RAM stick is not the only solution for such a situation. Let us look at some other possible solutions to this problem.

Switch to 64-bit Installation of Python

Commonly, a MemoryError exception occurs when using a 32-bit installation. A 32-bit Python installation can only access RAM approximately equal to 4 GB.

If the computer system is also 32-bit, the available memory is even less. In most cases, even 4 GB of memory is enough. Still, Python programming is a multi-purpose language.

It gets used in significant domains such as machine learning, data science, web development, app development, GUI Graphical User Interface, and artificial intelligence.

One should not get limited due to this threshold. To fix this, all you have to do is install the 64-bit version of the Python programming language.

A 64-bit computer system can access 2⁶⁴ different memory addresses or 18-Quintillion bytes of RAM. If you have a 64-bit computer system, you must use the 64-bit version of Python to play with its full potential.

Generator Functions in Python

When working on machine learning and data science projects, one must deal with massive datasets. Loading such gigantic datasets directly into the memory, performing operations over them, and saving the modifications can quickly fill up a system’s RAM.

This anomaly can cause substantial performance issues in an application. One way to fix this is to use generators. Generators generate data on the fly or whenever needed.

Python libraries such as Tensorflow and Keras provide utilities to create generators efficiently. One can also build generators using any libraries using pure Python.

To thoroughly learn about Python generators, refer to this article.

Optimizing Your Code in Python

One can resolve a MemoryError exception by optimizing their Python code. The optimization includes tasks such as:

• Getting rid of the garbage and unused data by deallocating or freeing the new or allocated memory.

• Saving fewer data to the memory and using generators instead.

• Using the batching technique breaking a massive dataset into smaller chunks of data to compute smaller pieces of data to obtain the final result.

  This technique is generally used while training gigantic machine learning models such as image classifiers, chatbots, unsupervised learning, and deep learning.

• To solve problems, use state-of-the-art algorithms and robust and advanced data structures such as graphs, trees, dictionaries, or maps.

• Using dynamic programming to retain pre-calculated results.

• Using powerful and efficient libraries such as Numpy, Keras, PyTorch, and Tensorflow to work with data.

Note that these techniques apply to all programming languages, such as Java, JavaScript, C, and C++.

Additionally, optimization improves the time complexity of a Python script, drastically improving the performance.

What is Memory Error?

Python Memory Error or in layman language is exactly what it means, you have run out of memory in your RAM for your code to execute.

When this error occurs it is likely because you have loaded the entire data into memory. For large datasets, you will want to use batch processing. Instead of loading your entire dataset into memory you should keep your data in your hard drive and access it in batches.

A memory error means that your program has run out of memory. This means that your program somehow creates too many objects. In your example, you have to look for parts of your algorithm that could be consuming a lot of memory.

If an operation runs out of memory it is known as memory error.

Types of Python Memory Error

Unexpected Memory Error in Python

If you get an unexpected Python Memory Error and you think you should have plenty of rams available, it might be because you are using a 32-bit python installation.

The easy solution for Unexpected Python Memory Error

Your program is running out of virtual address space. Most probably because you’re using a 32-bit version of Python. As Windows (and most other OSes as well) limits 32-bit applications to 2 GB of user-mode address space.

We Python Pooler’s recommend you to install a 64-bit version of Python (if you can, I’d recommend upgrading to Python 3 for other reasons); it will use more memory, but then, it will have access to a lot more memory space (and more physical RAM as well).

The issue is that 32-bit python only has access to ~4GB of RAM. This can shrink even further if your operating system is 32-bit, because of the operating system overhead.

For example, in Python 2 zip function takes in multiple iterables and returns a single iterator of tuples. Anyhow, we need each item from the iterator once for looping. So we don’t need to store all items in memory throughout looping. So it’d be better to use izip which retrieves each item only on next iterations. Python 3’s zip functions as izip by default.

Must Read: Python Print Without Newline

Python Memory Error Due to Dataset

Like the point, about 32 bit and 64-bit versions have already been covered, another possibility could be dataset size, if you’re working with a large dataset. Loading a large dataset directly into memory and performing computations on it and saving intermediate results of those computations can quickly fill up your memory. Generator functions come in very handy if this is your problem. Many popular python libraries like Keras and TensorFlow have specific functions and classes for generators.

Python Memory Error Due to Improper Installation of Python

Improper installation of Python packages may also lead to Memory Error. As a matter of fact, before solving the problem, We had installed on windows manually python 2.7 and the packages that I needed, after messing almost two days trying to figure out what was the problem, We reinstalled everything with Conda and the problem was solved.

We guess Conda is installing better memory management packages and that was the main reason. So you can try installing Python Packages using Conda, it may solve the Memory Error issue.

Most platforms return an “Out of Memory error” if an attempt to allocate a block of memory fails, but the root cause of that problem very rarely has anything to do with truly being “out of memory.” That’s because, on almost every modern operating system, the memory manager will happily use your available hard disk space as place to store pages of memory that don’t fit in RAM; your computer can usually allocate memory until the disk fills up and it may lead to Python Out of Memory Error(or a swap limit is hit; in Windows, see System Properties > Performance Options > Advanced > Virtual memory).

Making matters much worse, every active allocation in the program’s address space can cause “fragmentation” that can prevent future allocations by splitting available memory into chunks that are individually too small to satisfy a new allocation with one contiguous block.

¹ If a 32bit application has the LARGEADDRESSAWARE flag set, it has access to s full 4gb of address space when running on a 64bit version of Windows.

² So far, four readers have written to explain that the gcAllowVeryLargeObjects flag removes this .NET limitation. It does not. This flag allows objects which occupy more than 2gb of memory, but it does not permit a single-dimensional array to contain more than 2^31 entries.

How can I explicitly free memory in Python?

If you wrote a Python program that acts on a large input file to create a few million objects representing and it’s taking tons of memory and you need the best way to tell Python that you no longer need some of the data, and it can be freed?

The Simple answer to this problem is:

Force the garbage collector for releasing an unreferenced memory with gc.collect(). 

Like shown below:

import gc

gc.collect()

Memory error in Python when 50+GB is free and using 64bit python?

On some operating systems, there are limits to how much RAM a single CPU can handle. So even if there is enough RAM free, your single thread (=running on one core) cannot take more. But I don’t know if this is valid for your Windows version, though.

How do you set the memory usage for python programs?

Python uses garbage collection and built-in memory management to ensure the program only uses as much RAM as required. So unless you expressly write your program in such a way to bloat the memory usage, e.g. making a database in RAM, Python only uses what it needs.

Which begs the question, why would you want to use more RAM? The idea for most programmers is to minimize resource usage.

How to put limits on Memory and CPU Usage

To put limits on the memory or CPU use of a program running. So that we will not face any memory error. Well to do so, Resource module can be used and thus both the task can be performed very well as shown in the code given below:

Code #1: Restrict CPU time

# importing libraries 
import signal 
import resource 
import os 

# checking time limit exceed 
def time_exceeded(signo, frame): 
	print("Time's up !") 
	raise SystemExit(1) 

def set_max_runtime(seconds): 
	# setting up the resource limit 
	soft, hard = resource.getrlimit(resource.RLIMIT_CPU) 
	resource.setrlimit(resource.RLIMIT_CPU, (seconds, hard)) 
	signal.signal(signal.SIGXCPU, time_exceeded) 

# max run time of 15 millisecond 
if __name__ == '__main__': 
	set_max_runtime(15) 
	while True: 
		pass

Code #2: In order to restrict memory use, the code puts a limit on the total address space

# using resource 
import resource 

def limit_memory(maxsize): 
	soft, hard = resource.getrlimit(resource.RLIMIT_AS) 
	resource.setrlimit(resource.RLIMIT_AS, (maxsize, hard)) 

Ways to Handle Python Memory Error and Large Data Files

1. Allocate More Memory

Some Python tools or libraries may be limited by a default memory configuration.

Check if you can re-configure your tool or library to allocate more memory.

That is, a platform designed for handling very large datasets, that allows you to use data transforms and machine learning algorithms on top of it.

A good example is Weka, where you can increase the memory as a parameter when starting the application.

2. Work with a Smaller Sample

Are you sure you need to work with all of the data?

Take a random sample of your data, such as the first 1,000 or 100,000 rows. Use this smaller sample to work through your problem before fitting a final model on all of your data (using progressive data loading techniques).

I think this is a good practice in general for machine learning to give you quick spot-checks of algorithms and turnaround of results.

You may also consider performing a sensitivity analysis of the amount of data used to fit one algorithm compared to the model skill. Perhaps there is a natural point of diminishing returns that you can use as a heuristic size of your smaller sample.

3. Use a Computer with More Memory

Do you have to work on your computer?

Perhaps you can get access to a much larger computer with an order of magnitude more memory.

For example, a good option is to rent compute time on a cloud service like Amazon Web Services that offers machines with tens of gigabytes of RAM for less than a US dollar per hour.

4. Use a Relational Database

Relational databases provide a standard way of storing and accessing very large datasets.

Internally, the data is stored on disk can be progressively loaded in batches and can be queried using a standard query language (SQL).

Free open-source database tools like MySQL or Postgres can be used and most (all?) programming languages and many machine learning tools can connect directly to relational databases. You can also use a lightweight approach, such as SQLite.

5. Use a Big Data Platform

In some cases, you may need to resort to a big data platform.

Summary

In this post, you discovered a number of tactics and ways that you can use when dealing with Python Memory Error.

Are there other methods that you know about or have tried?
Share them in the comments below.

Have you tried any of these methods?
Let me know in the comments.

If your problem is still not solved and you need help regarding Python Memory Error. Comment Down below, We will try to solve your issue asap.

What exactly is a Memory Error?

Python Memory Error or, in layman’s terms, you’ve run out of Random access memory (RAM) to sustain the running of your code. This error indicates that you have loaded all of the data into memory. For large datasets, batch processing is advised. Instead of packing your complete dataset into memory, please save it to your hard disk and access it in batches.

Your software has run out of memory, resulting in a memory error. It indicates that your program generates an excessive number of items. You’ll need to check for parts of your algorithm that consume a lot of memory in your case.

A memory error occurs when an operation runs out of memory.

Python has a fallback exception, as do all programming languages, for when the interpreter runs out of memory and must abandon the current execution. Python issues a MemoryError in these (hopefully infrequent) cases, giving the script a chance to catch up and break free from the present memory dearth. However, because Python’s memory management architecture is based on the C language’s malloc() function, It is unlikely that all processes will recover – in some situations, a MemoryError will result in an unrecoverable crash.

A MemoryError usually signals a severe fault in the present application. A program that takes files or user data input, for example, may encounter MemoryErrors if it lacks proper sanity checks. Memory restrictions might cause problems in various situations, but we’ll stick with a simple allocation in local memory utilizing strings and arrays for our code example.

The computer architecture on which the executing system runs is the most crucial element in whether your applications are likely to incur MemoryErrors. Or, to be more particular, the architecture of the Python version you’re using. The maximum memory allocation granted to the Python process is meager if you’re running a 32-bit Python. The maximum memory allocation limit fluctuates and is dependent on your system. However, it is generally around 2 GB and never exceeds 4 GB.

64-bit Python versions, on the other hand, are essentially restricted only by the amount of memory available on your system. Thus, in practice, a 64-bit Python interpreter is unlikely to have memory problems, and if it does, the pain is much more severe because it would most likely affect the rest of the system.

To verify this, we’ll use psutil to get information about the running process, specifically the psutil.virtual memory() method, which returns current memory consumption statistics when called. The print() memory usage method prints the latter information:

Python Memory Errors There are Several Types of Python Memory Errors

In Python, an unexpected memory error occurs

Even if you have enough RAM, you could get an unexpected Python Memory Error, and you may be using a 32-bit Python installation.

Unexpected Python Memory Error: A Simple Solution

Your software has used up all of the virtual address space available to it. It’s most likely because you’re using a 32-bit Python version. Because 32-bit applications are limited to 2 GB of user-mode address space in Windows (and most other operating systems),

We Python Poolers recommend installing a 64-bit version of Python (if possible, update to Python 3 for various reasons); it will use more memory, but it will also have much more memory space available (and more physical RAM as well).

The problem is Python 32-bit only has 4GB of RAM. So it can be reduced due to operating system overhead even more if your operating system is 32-bit.

For example, the zip function in Python 2 accepts many iterables and produces a single tuple iterator. In any case, for looping, we only require each item from the iterator once. As a result, we don’t need to keep all of the things in memory while looping. As a result, it’s preferable to utilize izip, which retrieves each item only on subsequent cycles. Thus, by default, Python 3’s zip routines are called izip.

Memory Error in Python Because of the Dataset

Another choice, if you’re working with a huge dataset, is dataset size. The latter has already been mentioned concerning 32-bit and 64-bit versions. Loading a vast dataset into memory and running computations on it, and preserving intermediate results of such calculations can quickly consume memory. If this is the case, generator functions can be pretty helpful. Many major Python libraries, such as Keras and TensorFlow, include dedicated generator methods and classes.

Memory Error in Python Python was installed incorrectly

Improper Python package installation can also result in a Memory Error. In fact, before resolving the issue, we had manually installed python 2.7 and the programs that I need on Windows. We replaced everything using Conda after spending nearly two days attempting to figure out what was wrong, and the issue was resolved.

Conda is probably installing improved memory management packages, which is the main reason. So you might try installing Python Packages with Conda to see if that fixes the Memory Error.

Conda is a free and open-source package management and environment management system for Windows, Mac OS X, and Linux. Conda is a package manager that installs, runs, and updates packages and their dependencies in a matter of seconds.

Python Out of Memory Error

When an attempt to allocate a block of memory fails, most systems return an “Out of Memory” error, but the core cause of the problem rarely has anything to do with being “out of memory.” That’s because the memory manager on almost every modern operating system will gladly use your available hard disk space for storing memory pages that don’t fit in RAM. In addition, your computer can usually allocate memory until the disk fills up, which may result in a Python Out of Memory Error (or a swap limit is reached; in Windows, see System Properties > Performance Options > Advanced > Virtual memory).

To make matters worse, every current allocation in the program’s address space can result in “fragmentation,” which prevents further allocations by dividing available memory into chunks that are individually too small to satisfy a new allocation with a single contiguous block.

• When operating on a 64bit version of Windows, a 32bit application with the LARGEADDRESSAWARE flag set has access to the entire 4GB of address space.
• Four readers have contacted in to say that the gcAllowVeryLargeObjects setting removes the.NET restriction. No, it doesn’t. This setting permits objects to take up more than 2GB of memory, limiting the number of elements in a single-dimensional array to 231 entries.

In Python, how do I manually free memory?

If you’ve written a Python program that uses a large input file to generate a few million objects, and it’s eating up a lot of memory, what’s the best approach to tell Python that some of the data is no longer needed and may be freed?

This problem has a simple solution:

You can cause the garbage collector to release an unreferenced memory() by using gc.collect.
As illustrated in the example below:

Do you get a memory error when there are more than 50GB of free space in Python, and you’re using 64-bit Python?
On some operating systems, the amount of RAM that a single CPU can handle is limited. So, even if there is adequate RAM available, your single thread (=one core) will not be able to take it anymore. However, we are not certain that this applies to your Windows version.

How can you make python scripts use less memory?

Python uses garbage collection and built-in memory management to ensure that the application consumes as much memory as needed. So, unless you explicitly construct your program to balloon memory utilization, such as creating a RAM database, Python only utilizes what it requires.

Which begs the question of why you’d want to do it in the first place – consume more RAM in the first place. For most programmers, the goal is to use as few resources as possible.

If you wish to keep Python’s memory use low, virtual machine to a minimum, try this:

• On Linux, use the ulimit command to set a memory limit for Python.
• You can use the resource module to limit how much memory the program uses

Consider the following if you wish to speed up your software by giving it more memory: Multiprocessing, threading.
On only python 2.5, use pysco

How can I set memory and CPU usage limits?

To limit the amount of memory or CPU used by an application while it is running. So that we don’t have any memory problems. To accomplish so, the Resource module can be used, and both tasks can be completed successfully, as demonstrated in the code below:

Code 1: Limit CPU usage

# libraries being imported
import signal
import resource
import os

# confirm_exceed_in_time.py 
# confirm if there is an exceed in time limit
def exceeded_time(sig_number, frame):
    print("Time is finally up !")
    raise SystemExit(1)
 
def maximum_runtime(count_seconds):
    # resource limit setup 
    if_soft, if_hard = resource.getrlimit(resource.RLIMIT_CPU)
    resource.setrlimit(resource.RLIMIT_CPU, (count_seconds, if_hard))
    signal.signal(signal.SIGXCPU, exceeded_time)
 
# set a maximum running time of about 25 millisecond
if __name__ == '__main__':
    maximum_runtime(25)
    while True:
        pass

Code #2: To minimize memory usage, the code restricts the total address space available.

# using resource
import resource
 
def limit_memory(maxsize):
    if_soft, if_hard = resource.getrlimit(resource.RLIMIT_AS)
    resource.setrlimit(resource.RLIMIT_AS, (maxsize, if_hard))

How to Deal with Python Memory Errors and Big Data Files

Increase the amount of memory available

A default memory setup may limit some Python tools or modules.

Check to see if your tool or library may be re-configured to allocate more RAM.

That is a platform built to handle massive datasets and allow data transformations. On top of that and machine learning algorithms will be applied.
Weka is a fantastic example of this, as you may increase memory as a parameter when running the app.

Use a Smaller Sample Size

Are you sure you require all of the data?

Take a random sample of your data, such as the first 5,000 or 100,000 rows, before fitting a final model to Use this smaller sample to work through your problem instead of all of your data (using progressive data loading techniques).

It is an excellent practice for machine learning in general, as it allows for quick spot-checks of algorithms and results turnaround.

You may also compare the amount of data utilized to fit one algorithm to the model skill in a sensitivity analysis. Perhaps you can use a natural point of declining returns as a guideline for the size of your smaller sample.

Make use of a computer that has more memory

Is it necessary for you to use your computer? Of course, – it is possible to lay your hand’s on a considerably larger PC with significantly more memory. A good example is renting computing time from a cloud provider like Amazon Web Services, which offers workstations with tens of gigabytes of RAM for less than a dollar per hour.

Make use of a database that is relational

Relational databases are a standard method of storing and retrieving massive datasets.

Internally, data is saved on a disk, loaded in batches, and searched using a standard query language (SQL).

Most (all?) programming languages and many machine learning tools can connect directly to relational databases, as can free open-source database solutions like MySQL or Postgres. You can also use SQLite, which is a lightweight database.

Use a big data platform to your advantage

In some cases, you may need to use a big data platform.

Error Monitoring Software

Airbrake’s powerful error monitoring software delivers real-time error monitoring and automatic exception reporting for all of your development projects. Airbrake’s cutting-edge web dashboard keeps you up to current on your application’s health and error rates at all times. Airbrake effortlessly interacts with all of the most common languages and frameworks, no matter what you’re working on. Furthermore, Airbrake makes it simple to adjust exception parameters while providing you complete control over the active error filter system, ensuring that only the most critical errors are collected.

Check out Airbrake’s error monitoring software for yourself and see why so many of the world’s greatest engineering teams rely on it to transform their exception handling techniques!

Summary

In this article, you learned about various strategies and methods for coping with Python Memory Error.

Would you mind letting us know in the comments section if you have used any of these methods?

Skip to content